Shiny web application for visualizing disease transmittion networks from phylogenetic trees.

Persistence of Genes that Confer Antimicrobial Resistance in the History of Escherichia coli Genomes

Positive selection analysis of the erythrocyte binding protein in P. vivax as it relates to malaria infections.

Easily output package citations and tidy session information for reproducibility in research publications.

R functions for interfacing with the Microsoft Genomics service in Azure.

A patchwork of efficient and tidy multidimensional data operations.

Using phylogenetic analysis, dimensionality reduction, and machine learning, a combined migratory model of the Bantu migration was formed with heterogeneous data.

Parallel Implementations of the Empirical Bayesian Elastic Net Cross-Validation in R.

Using unsupervised learning for dimensionality reduction and visualization.

Analysis and visualzation of the WHO reports of MERS infections versus genomic data.

PolyPhen2 + Machine Learning prediction of the effects of genetic mutations on mucopolysaccharidosis IIIB.